Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021054.1 Corchorus olitorius cultivar O-4 contig21087, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94621

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89--205
57
2.0
58
95
1
209
40
1
24
33
1.66
2398--2434
18
2.1
18
90
10
58
48
16
18
16
1.81
2530--2586
29
1.9
29
85
3
78
31
15
19
33
1.93
13612--13638
8
3.4
8
100
0
54
51
11
0
37
1.37
13620--13731
40
2.8
40
100
0
224
43
16
0
39
1.49
13604--13718
40
2.6
48
78
21
174
43
16
0
40
1.48
18783--18872
3
29.7
3
73
2
54
53
0
42
4
1.21
41003--41035
17
1.9
17
88
11
50
39
6
3
51
1.42
50038--50099
31
2.0
31
100
0
124
32
12
29
25
1.93
53031--53087
24
2.4
24
90
0
87
26
42
12
19
1.86
54152--54220
21
3.3
22
85
6
72
40
5
27
26
1.78
54167--54228
21
3.0
21
95
0
106
43
4
27
24
1.74
62620--62657
20
1.9
20
88
0
58
13
5
31
50
1.63
63419--63802
179
2.1
177
82
4
457
37
16
13
32
1.88
69813--70723
439
2.1
438
82
4
1077
41
16
14
27
1.87
73879--73945
33
2.0
33
100
0
134
35
17
13
32
1.89
75167--75237
37
1.9
37
88
0
106
38
18
7
36
1.78
86157--86326
93
1.8
93
92
0
286
52
2
12
31
1.54
87309--87364
21
2.8
20
74
15
53
69
0
12
17
1.18
87008--88194
599
2.0
590
94
3
2060
35
16
20
28
1.94
89511--89633
61
2.0
61
93
0
210
21
19
23
34
1.96

Tables:   1

The End!