Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021071.1 Corchorus olitorius cultivar O-4 contig21104, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23140

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1310--1564
129
2.0
129
85
3
350
32
19
7
40
1.80
4230--4268
15
2.7
14
84
4
51
17
0
7
74
1.05
4230--4269
14
2.7
15
88
11
57
20
0
7
72
1.08
4256--4302
24
2.0
24
95
0
85
34
0
14
51
1.43
4259--4310
24
2.2
24
85
0
68
32
0
17
50
1.47
5019--5044
13
2.0
13
100
0
52
15
0
15
69
1.20
5039--5086
24
2.0
23
96
4
87
33
0
16
50
1.46
5046--5097
24
2.2
24
85
0
68
32
0
21
46
1.52
5214--5243
6
4.8
6
95
4
51
50
0
13
36
1.42
5214--5247
12
2.8
13
86
13
54
50
0
11
38
1.39
14899--15029
68
1.9
68
92
0
217
48
13
12
24
1.78
16607--16655
16
3.2
16
72
21
59
59
4
2
34
1.28
16607--16651
14
2.9
16
72
24
51
60
4
2
33
1.29
19502--19547
24
1.9
24
90
0
74
45
15
8
30
1.76
21399--21455
27
2.1
28
87
9
82
22
17
0
59
1.37

Tables:   1

The End!