Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021075.1 Corchorus olitorius cultivar O-4 contig21108, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17169
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:11813 original size:42 final size:42

Alignment explanation


    Indices: 11754--11837  Score: 159
    Period size: 42  Copynumber: 2.0  Consensus size: 42

      11744 TGAGCTAGTA

                                                      
      11754 CTATTTAAAAGAATATATACAAAACGTAATTATTTGATACAC
          1 CTATTTAAAAGAATATATACAAAACGTAATTATTTGATACAC

                                    *                 
      11796 CTATTTAAAAGAATATATACAAAAGGTAATTATTTGATACAC
          1 CTATTTAAAAGAATATATACAAAACGTAATTATTTGATACAC

      11838 TGGCGGTGTA


Statistics
Matches: 41,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  42   41  1.00

ACGTcount: A:0.48, C:0.11, G:0.08, T:0.33


Consensus pattern (42 bp):   
CTATTTAAAAGAATATATACAAAACGTAATTATTTGATACAC
Done.