Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021076.1 Corchorus olitorius cultivar O-4 contig21109, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6234
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:3921 original size:31 final size:30

Alignment explanation


    Indices: 3860--3923  Score: 76
    Period size: 31  Copynumber: 2.1  Consensus size: 30

       3850 ATGGAGAACA

                    *                *    
       3860 TTTTGAACCACAATTCCAGTATAATTTTTT
          1 TTTTGAACAACAATTCCAGTATAATATTTT

                                     *      
       3890 TTTTGAACAAACAATTCCA-TAATAGTATTTT
          1 TTTTGAAC-AACAATTCCAGT-ATAATATTTT

               
       3921 TTT
          1 TTT

       3924 ATTGTCTTAC


Statistics
Matches: 29,  Mismatches: 3, Indels: 3
        0.83            0.09        0.09

Matches are distributed among these distances:
  30    9  0.31
  31   20  0.69

ACGTcount: A:0.33, C:0.14, G:0.06, T:0.47


Consensus pattern (30 bp):   
TTTTGAACAACAATTCCAGTATAATATTTT
Done.