Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021083.1 Corchorus olitorius cultivar O-4 contig21116, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8071
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.32


Found at i:4940 original size:19 final size:19

Alignment explanation


    Indices: 4916--4954  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       4906 TGAATGAGCA

                               
       4916 TTAATAATCTTCTAGATTC
          1 TTAATAATCTTCTAGATTC

                               
       4935 TTAATAATCTTCTAGATTC
          1 TTAATAATCTTCTAGATTC

             
       4954 T
          1 T

       4955 ACGATCCCAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.31, C:0.15, G:0.05, T:0.49


Consensus pattern (19 bp):   
TTAATAATCTTCTAGATTC

Found at i:5029 original size:46 final size:46

Alignment explanation


    Indices: 4962--5053  Score: 184
    Period size: 46  Copynumber: 2.0  Consensus size: 46

       4952 TCTACGATCC

                                                          
       4962 CAAGAAGATGGGGCGCCAAAGAAATGGCAAGTTAGGAAGAAAGTTA
          1 CAAGAAGATGGGGCGCCAAAGAAATGGCAAGTTAGGAAGAAAGTTA

                                                          
       5008 CAAGAAGATGGGGCGCCAAAGAAATGGCAAGTTAGGAAGAAAGTTA
          1 CAAGAAGATGGGGCGCCAAAGAAATGGCAAGTTAGGAAGAAAGTTA

       5054 GAGACACAAT


Statistics
Matches: 46,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   46  1.00

ACGTcount: A:0.43, C:0.11, G:0.33, T:0.13


Consensus pattern (46 bp):   
CAAGAAGATGGGGCGCCAAAGAAATGGCAAGTTAGGAAGAAAGTTA
Done.