Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021086.1 Corchorus olitorius cultivar O-4 contig21119, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16334

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
251--290
21
2.0
20
85
5
53
72
5
20
2
1.15
1471--1512
10
4.2
10
79
11
50
33
2
19
45
1.63
6338--6383
20
2.3
20
92
3
76
47
19
15
17
1.82
7478--8662
333
3.6
329
83
5
1447
36
17
14
31
1.90
9022--9069
25
1.9
25
91
0
78
35
10
18
35
1.85
12898--13160
137
2.0
133
84
9
344
37
9
7
45
1.64
13352--13522
22
7.7
22
70
11
107
35
10
16
36
1.84
13349--13584
66
3.5
66
78
6
208
34
9
18
37
1.83
13589--13648
22
2.7
22
80
10
68
38
10
16
35
1.82
13661--13722
22
2.8
23
76
9
76
30
6
14
48
1.69
13759--14013
22
11.6
23
71
15
112
41
10
14
32
1.80
13844--13969
66
1.9
66
83
0
162
42
11
13
32
1.79
13842--13988
66
2.2
66
80
0
159
42
10
13
33
1.79
14094--14268
22
8.0
22
74
9
119
37
10
16
35
1.83
14107--14268
66
2.5
66
78
5
175
36
10
17
35
1.84
14239--14282
22
2.0
22
82
8
54
45
4
20
29
1.71
14309--14362
22
2.5
22
84
6
65
40
3
18
37
1.69

Tables:   1

The End!