Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021087.1 Corchorus olitorius cultivar O-4 contig21120, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6072
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39


Found at i:5214 original size:21 final size:21

Alignment explanation


    Indices: 5177--5216  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       5167 ATGTGTTGTT

                       *         
       5177 TTTTCATGATATATATGTTGC
          1 TTTTCATGATAAATATGTTGC

                                
       5198 TTTTC-TGATAAATTATGTT
          1 TTTTCATGATAAA-TATGTT

       5217 TGTGCTTAGT


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    6  0.35
  21   11  0.65

ACGTcount: A:0.25, C:0.07, G:0.12, T:0.55


Consensus pattern (21 bp):   
TTTTCATGATAAATATGTTGC
Done.