Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01021088.1 Corchorus olitorius cultivar O-4 contig21121, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 80758
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Found at i:2579 original size:141 final size:142
Alignment explanation
Indices: 2434--2709 Score: 401
Period size: 141 Copynumber: 2.0 Consensus size: 142
2424 TGACGACATC
* *
2434 ATCGACACAAAAACTGTATCTAATAATGACAATTATGTCGACACAAGAAATACTAAGAGTGACAA
1 ATCGACACAAAAACTGTACCTAATAATGACAATTATGTCGACACAAGAAACACTAAGAGTGACAA
* *
2499 TATAAGTTGTCATTATAGGTAATCTTTTGTGACGACA-TTTTTGACACTATAATTATTGATAATA
66 TATAAGTTGTCATTATACGTAATCTTGTGTGACGACATTTTTTGACACTATAATTATTGATAATA
2563 GTGACAAAATGG
131 GTGACAAAATGG
* * * ** * * * *
2575 ATCGACACAATAACTGTACCTATTAATGGCGGTTATGTCGACACAAGAAGCCCTAATAGTGACTA
1 ATCGACACAAAAACTGTACCTAATAATGACAATTATGTCGACACAAGAAACACTAAGAGTGACAA
* * *
2640 TATAAGTTGTCATTATACTTACTCTTGTGTGACGACATTTTTTGATACTATAATTATTGATAATA
66 TATAAGTTGTCATTATACGTAATCTTGTGTGACGACATTTTTTGACACTATAATTATTGATAATA
2705 GTGAC
131 GTGAC
2710 GAAAGGAATG
Statistics
Matches: 118, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
141 87 0.74
142 31 0.26
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (142 bp):
ATCGACACAAAAACTGTACCTAATAATGACAATTATGTCGACACAAGAAACACTAAGAGTGACAA
TATAAGTTGTCATTATACGTAATCTTGTGTGACGACATTTTTTGACACTATAATTATTGATAATA
GTGACAAAATGG
Found at i:7660 original size:16 final size:16
Alignment explanation
Indices: 7639--7669 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7629 TTTATTAAAT
*
7639 AATAATTATTTTTAAG
1 AATAATTATTATTAAG
7655 AATAATTATTATTAA
1 AATAATTATTATTAA
7670 TATTCCCCTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
AATAATTATTATTAAG
Found at i:19033 original size:38 final size:38
Alignment explanation
Indices: 18982--19170 Score: 192
Period size: 38 Copynumber: 5.1 Consensus size: 38
18972 ACTTGCAGCC
*
18982 TCTTGCAAATGAGCTGTTAATATTATGTACAGAAACAA
1 TCTTGCAAATGAGCTGTTATTATTATGTACAGAAACAA
19020 TCTTGCAAATGAGCTGTTATTATTATGTACAGAAACAA
1 TCTTGCAAATGAGCTGTTATTATTATGTACAGAAACAA
* * * * * *** * * * *
19058 TC--G-ATACTTAGGC-ATCATCA-TAAAAACTTGCAGC-C
1 TCTTGCA-AATGA-GCTGTTATTATTATGTAC-AGAAACAA
19093 TCTTGCAAATGAGCTGTTATTATTATGTACAGAAACAA
1 TCTTGCAAATGAGCTGTTATTATTATGTACAGAAACAA
19131 TCTTGCAAATGAGCTGTTATTATTATGTACAGAAACAA
1 TCTTGCAAATGAGCTGTTATTATTATGTACAGAAACAA
19169 TC
1 TC
19171 GATAAGTATT
Statistics
Matches: 117, Mismatches: 25, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
35 7 0.06
36 13 0.11
37 13 0.11
38 84 0.72
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (38 bp):
TCTTGCAAATGAGCTGTTATTATTATGTACAGAAACAA
Found at i:19148 original size:111 final size:111
Alignment explanation
Indices: 18954--19174 Score: 433
Period size: 111 Copynumber: 2.0 Consensus size: 111
18944 GAATATGGTA
18954 TTAGGCATCATCATAAAAACTTGCAGCCTCTTGCAAATGAGCTGTTAATATTATGTACAGAAACA
1 TTAGGCATCATCATAAAAACTTGCAGCCTCTTGCAAATGAGCTGTTAATATTATGTACAGAAACA
19019 ATCTTGCAAATGAGCTGTTATTATTATGTACAGAAACAATCGATAC
66 ATCTTGCAAATGAGCTGTTATTATTATGTACAGAAACAATCGATAC
*
19065 TTAGGCATCATCATAAAAACTTGCAGCCTCTTGCAAATGAGCTGTTATTATTATGTACAGAAACA
1 TTAGGCATCATCATAAAAACTTGCAGCCTCTTGCAAATGAGCTGTTAATATTATGTACAGAAACA
19130 ATCTTGCAAATGAGCTGTTATTATTATGTACAGAAACAATCGATA
66 ATCTTGCAAATGAGCTGTTATTATTATGTACAGAAACAATCGATA
19175 AGTATTTGTC
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 109 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (111 bp):
TTAGGCATCATCATAAAAACTTGCAGCCTCTTGCAAATGAGCTGTTAATATTATGTACAGAAACA
ATCTTGCAAATGAGCTGTTATTATTATGTACAGAAACAATCGATAC
Found at i:23243 original size:22 final size:22
Alignment explanation
Indices: 23218--23266 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
23208 ACACAGGGCA
*
23218 CCAAAAACATACAATTTAATAG
1 CCAAAAACATACAATTCAATAG
23240 CCAAAAACATACAATTCAATAG
1 CCAAAAACATACAATTCAATAG
23262 CCAAA
1 CCAAA
23267 CCCCTATACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.55, C:0.22, G:0.04, T:0.18
Consensus pattern (22 bp):
CCAAAAACATACAATTCAATAG
Found at i:32774 original size:18 final size:18
Alignment explanation
Indices: 32751--32847 Score: 59
Period size: 18 Copynumber: 5.4 Consensus size: 18
32741 AGGTGGAGGG
32751 GGTGCAGCAGGAGGTTTT
1 GGTGCAGCAGGAGGTTTT
* * ***
32769 GGTGCAGGAGGTGGTGGG
1 GGTGCAGCAGGAGGTTTT
*
32787 GGTGCAGCAGGAAGTTTT
1 GGTGCAGCAGGAGGTTTT
* * * * ****
32805 GGAGCACCGGGTGGAGGG
1 GGTGCAGCAGGAGGTTTT
32823 GGTGCAGCAGGAGGTTTT
1 GGTGCAGCAGGAGGTTTT
*
32841 GGAGCAG
1 GGTGCAG
32848 GGGGGGGAGG
Statistics
Matches: 50, Mismatches: 29, Indels: 0
0.63 0.37 0.00
Matches are distributed among these distances:
18 50 1.00
ACGTcount: A:0.18, C:0.11, G:0.52, T:0.20
Consensus pattern (18 bp):
GGTGCAGCAGGAGGTTTT
Found at i:32788 original size:36 final size:36
Alignment explanation
Indices: 32739--32893 Score: 222
Period size: 36 Copynumber: 4.3 Consensus size: 36
32729 CCTATGGCCT
*
32739 GGAGGTGGAGGGGGTGCAGCAGGAGGTTTTGGTGCA
1 GGAGGTGGAGGGGGTGCAGCAGGAGGTTTTGGAGCA
* *
32775 GGAGGTGGTGGGGGTGCAGCAGGAAGTTTTGGAGCA
1 GGAGGTGGAGGGGGTGCAGCAGGAGGTTTTGGAGCA
*
32811 CCG-GGTGGAGGGGGTGCAGCAGGAGGTTTTGGAGCA
1 -GGAGGTGGAGGGGGTGCAGCAGGAGGTTTTGGAGCA
* * * *
32847 GGGGGGGGAGGGGGCGCAGCAGGAGGTTTTGGTGCA
1 GGAGGTGGAGGGGGTGCAGCAGGAGGTTTTGGAGCA
32883 GGAGGTGGAGG
1 GGAGGTGGAGG
32894 TGGAGGAATA
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
35 1 0.01
36 103 0.98
37 1 0.01
ACGTcount: A:0.17, C:0.10, G:0.57, T:0.17
Consensus pattern (36 bp):
GGAGGTGGAGGGGGTGCAGCAGGAGGTTTTGGAGCA
Found at i:32997 original size:99 final size:99
Alignment explanation
Indices: 32885--33094 Score: 368
Period size: 99 Copynumber: 2.1 Consensus size: 99
32875 TTGGTGCAGG
*
32885 AGGTGGAGGTGGAGGAATAGGAACTGACCCAGCAGGTCCTCTAGGAGGCGGAGGCGGTGGTGGAG
1 AGGTGGAGGTGGAGGAATAGGAACTGACCCAGCAGGTCCTCTAGGAGGCGGAGGCGGAGGTGGAG
32950 GTGGCCGAGGCACACTAGCATTATGACATTGAAC
66 GTGGCCGAGGCACACTAGCATTATGACATTGAAC
*
32984 AGGTGGAGGTGGAGGAATAGGAACTGATCCAGCAGGTCCTCTAGGAGGCGGAGGCGGAGGTGGAG
1 AGGTGGAGGTGGAGGAATAGGAACTGACCCAGCAGGTCCTCTAGGAGGCGGAGGCGGAGGTGGAG
**
33049 GTGGCCGAGGCACACTAGCATTATGATGTTGAAC
66 GTGGCCGAGGCACACTAGCATTATGACATTGAAC
33083 AGG-GGCAGGTGG
1 AGGTGG-AGGTGG
33095 TACCCCGTGA
Statistics
Matches: 106, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
98 2 0.02
99 104 0.98
ACGTcount: A:0.25, C:0.17, G:0.42, T:0.16
Consensus pattern (99 bp):
AGGTGGAGGTGGAGGAATAGGAACTGACCCAGCAGGTCCTCTAGGAGGCGGAGGCGGAGGTGGAG
GTGGCCGAGGCACACTAGCATTATGACATTGAAC
Found at i:33217 original size:6 final size:6
Alignment explanation
Indices: 33210--33249 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
33200 TGGGGGCAGG
*
33210 GGTGGG GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GGTG
1 GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GGTG
33250 ATAGGGATGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.12, C:0.00, G:0.70, T:0.17
Consensus pattern (6 bp):
GGTGGA
Found at i:37524 original size:12 final size:12
Alignment explanation
Indices: 37507--37531 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37497 TATCCAATAG
37507 TCATATTGTTAT
1 TCATATTGTTAT
37519 TCATATTGTTAT
1 TCATATTGTTAT
37531 T
1 T
37532 TTAAATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.60
Consensus pattern (12 bp):
TCATATTGTTAT
Found at i:47377 original size:91 final size:91
Alignment explanation
Indices: 47222--47402 Score: 353
Period size: 91 Copynumber: 2.0 Consensus size: 91
47212 AAACAGCAAC
*
47222 ACTATGGGCGCAGAGTACTTCAGTTTGAAGGTATGAGAAGGAAGCTCCTTTTCAAAAAGACCATG
1 ACTATGGGCGCAGAGTACTTCAGTTCGAAGGTATGAGAAGGAAGCTCCTTTTCAAAAAGACCATG
47287 AACAGAACAGAACAGGAACTGAAATA
66 AACAGAACAGAACAGGAACTGAAATA
47313 ACTATGGGCGCAGAGTACTTCAGTTCGAAGGTATGAGAAGGAAGCTCCTTTTCAAAAAGACCATG
1 ACTATGGGCGCAGAGTACTTCAGTTCGAAGGTATGAGAAGGAAGCTCCTTTTCAAAAAGACCATG
47378 AACAGAACAGAACAGGAACTGAAAT
66 AACAGAACAGAACAGGAACTGAAAT
47403 CTTGCACTGA
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.19
Consensus pattern (91 bp):
ACTATGGGCGCAGAGTACTTCAGTTCGAAGGTATGAGAAGGAAGCTCCTTTTCAAAAAGACCATG
AACAGAACAGAACAGGAACTGAAATA
Found at i:49367 original size:14 final size:13
Alignment explanation
Indices: 49344--49380 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
49334 TGAATAAATA
49344 ATATTATGTATAT
1 ATATTATGTATAT
49357 ATATATATGTATAT
1 ATAT-TATGTATAT
49371 ATATT-TGTAT
1 ATATTATGTAT
49381 CGAGTACCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
ATATTATGTATAT
Found at i:49487 original size:29 final size:29
Alignment explanation
Indices: 49420--49489 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
49410 ATCATTGAGT
* *
49420 TCGAGCTCGACTCGATTCGATACTCAAGC
1 TCGAGCTCGGCTAGATTCGATACTCAAGC
** *
49449 TCGAATTCGGCTAGATTCGATACTCGAGC
1 TCGAGCTCGGCTAGATTCGATACTCAAGC
49478 TCGAGCTCGGCT
1 TCGAGCTCGGCT
49490 CGACAATAAC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (29 bp):
TCGAGCTCGGCTAGATTCGATACTCAAGC
Found at i:53630 original size:111 final size:111
Alignment explanation
Indices: 53436--53652 Score: 353
Period size: 111 Copynumber: 2.0 Consensus size: 111
53426 ACTCTATAAT
*
53436 CAAAGGAAAATAATCTTATTTGGTACCAAAATGTAGGAAAATAGTACTATTAACTATGAGTAATG
1 CAAAGGAAAATAATCTAATTTGGTACCAAAATGTAGGAAAATAGTACTATTAACTATGAGTAATG
* *
53501 GTGCTTGCTCTACTAAAAATTTACTAGCACCGAATCATCATAAAAA
66 GTACTTGCTCTACTAAAAATTTACTAGCACCAAATCATCATAAAAA
* * *
53547 CAAAGGCAAATTATCTAATTTTGTACCAAAATGTAGGAAAATAGTACTATTAACTATGAGTAATG
1 CAAAGGAAAATAATCTAATTTGGTACCAAAATGTAGGAAAATAGTACTATTAACTATGAGTAATG
* * *
53612 TTACTTGCTCTACTAAAAATTTGCTAGTACCAAATCATCAT
66 GTACTTGCTCTACTAAAAATTTACTAGCACCAAATCATCAT
53653 GCCTAAAATT
Statistics
Matches: 97, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
111 97 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (111 bp):
CAAAGGAAAATAATCTAATTTGGTACCAAAATGTAGGAAAATAGTACTATTAACTATGAGTAATG
GTACTTGCTCTACTAAAAATTTACTAGCACCAAATCATCATAAAAA
Found at i:53670 original size:31 final size:31
Alignment explanation
Indices: 53624--53689 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
53614 ACTTGCTCTA
*
53624 CTAAAAATTTGCTAGTACCAAATCATCATGC
1 CTAAAAATTTACTAGTACCAAATCATCATGC
* *
53655 CTAAAATTTTACTAGTACCAAATCATCGTGC
1 CTAAAAATTTACTAGTACCAAATCATCATGC
53686 CTAA
1 CTAA
53690 CGTGATATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (31 bp):
CTAAAAATTTACTAGTACCAAATCATCATGC
Found at i:57667 original size:51 final size:50
Alignment explanation
Indices: 57607--57709 Score: 136
Period size: 51 Copynumber: 2.0 Consensus size: 50
57597 GAACTTTTAA
** *
57607 ACTTTGATGCAATTTCTCTTAGTCGAA-AGTGATGGATTGTGAAATTTTGCC
1 ACTTTGATGCAATTGATCTTAGTCGAAGA-TGATGAATTGTG-AATTTTGCC
* *
57658 ACTTTGATGCAATTGATCTTATTCGAGGATGATGAATTGTGAATTTTGCC
1 ACTTTGATGCAATTGATCTTAGTCGAAGATGATGAATTGTGAATTTTGCC
57708 AC
1 AC
57710 ATCTTTAGAT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
50 11 0.24
51 34 0.74
52 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.39
Consensus pattern (50 bp):
ACTTTGATGCAATTGATCTTAGTCGAAGATGATGAATTGTGAATTTTGCC
Found at i:60541 original size:18 final size:18
Alignment explanation
Indices: 60514--60549 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
60504 CTTATTAGAC
* *
60514 TTTTTGCCCTAACTATTG
1 TTTTTACCCTAAATATTG
60532 TTTTTACCCTAAATATTG
1 TTTTTACCCTAAATATTG
60550 CGTCAATGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.19, G:0.08, T:0.50
Consensus pattern (18 bp):
TTTTTACCCTAAATATTG
Found at i:60838 original size:14 final size:16
Alignment explanation
Indices: 60819--60851 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
60809 TTTTGCCCAT
60819 TGAACTT-CAAA-TCA
1 TGAACTTCCAAATTCA
60833 TGAACTTCCAAATTCA
1 TGAACTTCCAAATTCA
60849 TGA
1 TGA
60852 CATTTTGGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 4 0.24
16 6 0.35
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (16 bp):
TGAACTTCCAAATTCA
Found at i:66787 original size:50 final size:50
Alignment explanation
Indices: 66700--66797 Score: 137
Period size: 50 Copynumber: 2.0 Consensus size: 50
66690 TATGTACTAG
* *
66700 TCATCCAGGGCTTTCTTACTTTGCAGAAGTTTCTTTTATTCTCTTACTCAT
1 TCATCCAGGGCTTCCTTAATTTGCAGAAGTTTCTTTTATTCT-TTACTCAT
*
66751 TCATCCAGGG-TTCCTTAATTTGCAGTAG-TTCATTTTATTCTTTACTC
1 TCATCCAGGGCTTCCTTAATTTGCAGAAGTTTC-TTTTATTCTTTACTC
66798 TTTATAACAA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
49 9 0.21
50 24 0.56
51 10 0.23
ACGTcount: A:0.18, C:0.22, G:0.12, T:0.47
Consensus pattern (50 bp):
TCATCCAGGGCTTCCTTAATTTGCAGAAGTTTCTTTTATTCTTTACTCAT
Found at i:78948 original size:14 final size:13
Alignment explanation
Indices: 78929--78967 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
78919 AAATTGTAAA
78929 ATTTAAAAAATTT
1 ATTTAAAAAATTT
* *
78942 CATTTAAGAAATAT
1 -ATTTAAAAAATTT
78956 ATTTAAAAAATT
1 ATTTAAAAAATT
78968 CTAATATATA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (13 bp):
ATTTAAAAAATTT
Found at i:79178 original size:124 final size:123
Alignment explanation
Indices: 78950--79326 Score: 598
Period size: 120 Copynumber: 3.0 Consensus size: 123
78940 TTCATTTAAG
78950 AAATATATTTAAAAAATTCTAATATATATAAGTTTTTTAATTAAAATAGTAAAATGGTAAAAATA
1 AAATATATTTAAAAAATTCTAATATATATAAGTTTTTTAATTAAAATAGTAAAATGGTAAAAAT-
*
79015 AAATAGGTATAAGGATATTAGATTTAATTAAATAGAAATAGAGTTTTTAGTTGAGTAAAACTGTA
65 ---TA--TA-AA-GATATTAGATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTGTA
79080 A
123 A
79081 AAATATATTTAAAAAATTCTAATATATATAAGTTTTTTTAATTAAAATAGTAAAATGGTAAAAAT
1 AAATATATTTAAAAAATTCTAATATATATAAG-TTTTTTAATTAAAATAGTAAAATGGTAAAAAT
* *
79146 TATAAAGATATTCGATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAATTGTAA
65 TATAAAGATATTAGATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTGTAA
* *
79205 AAGTATATTTAAAAAA-T-T-ATATATATAAGTTTTTTAATTAAAATAGTAAAATGGTAAAAATG
1 AAATATATTTAAAAAATTCTAATATATATAAGTTTTTTAATTAAAATAGTAAAATGGTAAAAATT
*
79267 ATAAAGATATTAGATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAA
66 ATAAAGATATTAGATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTGTAA
79325 AA
1 AA
79327 GTTTAAACAA
Statistics
Matches: 237, Mismatches: 8, Indels: 13
0.92 0.03 0.05
Matches are distributed among these distances:
120 89 0.38
121 11 0.05
122 1 0.00
123 1 0.00
124 65 0.27
125 2 0.01
126 2 0.01
128 2 0.01
131 32 0.14
132 32 0.14
ACGTcount: A:0.50, C:0.01, G:0.11, T:0.38
Consensus pattern (123 bp):
AAATATATTTAAAAAATTCTAATATATATAAGTTTTTTAATTAAAATAGTAAAATGGTAAAAATT
ATAAAGATATTAGATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTGTAA
Done.