Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021092.1 Corchorus olitorius cultivar O-4 contig21125, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66457

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1272--1297
12
2.2
12
100
0
52
34
7
0
57
1.27
3008--3102
45
2.2
43
87
7
140
40
21
5
33
1.75
5375--5537
60
2.7
60
85
1
220
36
19
19
25
1.95
5435--5538
31
3.4
31
67
19
92
36
20
18
25
1.94
5609--5633
12
2.1
12
100
0
50
8
16
28
48
1.74
12602--12632
11
2.8
11
95
0
53
54
0
3
41
1.16
17807--17889
42
2.0
42
95
0
148
30
6
16
46
1.71
26793--26864
27
2.5
31
86
8
98
37
19
6
36
1.79
27836--27907
28
2.5
28
84
8
83
36
6
20
36
1.80
28796--28843
20
2.4
20
100
0
96
25
37
0
37
1.56
29147--29210
31
2.1
31
87
0
92
26
20
10
42
1.85
31169--31194
12
2.2
12
100
0
52
61
7
0
30
1.24
31346--31514
56
3.0
56
90
0
275
35
20
1
42
1.63
31580--31660
42
1.9
42
97
0
153
29
7
16
46
1.73
34407--34469
29
2.2
28
80
8
72
20
12
15
50
1.77
36394--36427
17
2.0
17
88
0
50
50
2
29
17
1.61
38129--38178
27
2.0
27
84
11
70
44
0
0
56
0.99
38143--38229
40
2.1
41
81
10
108
47
2
1
49
1.21
49358--49383
3
8.7
3
100
0
52
69
0
30
0
0.89
51863--51946
39
2.2
39
100
0
168
23
20
14
41
1.89
52161--52211
22
2.3
23
82
6
68
13
49
0
37
1.43
58928--59002
29
2.5
30
95
4
134
37
16
25
21
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59608--59637
16
1.9
15
93
6
51
46
23
13
16
1.82

Tables:   1

The End!