Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021093.1 Corchorus olitorius cultivar O-4 contig21126, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4576
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34


Found at i:2485 original size:53 final size:53

Alignment explanation


    Indices: 2375--2489  Score: 139
    Period size: 53  Copynumber: 2.2  Consensus size: 53

       2365 GAAAGTTAGG

                                   *                         *   
       2375 TTACTTTCCCACCATTTTTGATTTAACCAAACCATGGAAAACGTTTCCATCTT
          1 TTACTTTCCCACCATTTTTGATTCAACCAAACCATGGAAAACGTTTCCACCTT

                                                        *           
       2428 TTACTTTCCCA-CATGTTTT-AGTTCAACCAAACCATGGAAAA-TTTTCTC-CCTT
          1 TTACTTTCCCACCAT-TTTTGA-TTCAACCAAACCATGGAAAACGTTTC-CACCTT

                      
       2480 ATTACTTTCC
          1 -TTACTTTCC

       2490 ATGGAAAATA


Statistics
Matches: 55,  Mismatches: 3, Indels: 8
        0.83            0.05        0.12

Matches are distributed among these distances:
  52   11  0.20
  53   44  0.80

ACGTcount: A:0.27, C:0.27, G:0.07, T:0.39


Consensus pattern (53 bp):   
TTACTTTCCCACCATTTTTGATTCAACCAAACCATGGAAAACGTTTCCACCTT
Done.