Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021094.1 Corchorus olitorius cultivar O-4 contig21127, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25957

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
127--182
29
2.0
28
92
3
94
28
10
21
39
1.87
1436--1487
3
17.7
3
96
4
97
67
0
0
32
0.91
7950--8077
60
2.1
60
85
5
170
36
13
17
32
1.89
7964--8078
60
1.9
60
89
3
178
34
13
18
33
1.89
8576--8605
12
2.5
12
94
0
51
40
6
16
36
1.75
9809--9876
34
2.0
35
100
0
122
17
20
11
50
1.77
16871--17017
73
2.0
73
94
0
258
21
5
23
49
1.70
20920--21966
317
3.2
319
78
11
1003
36
16
14
32
1.89
21720--22185
252
1.8
253
82
5
604
36
17
15
30
1.91
21076--22867
899
2.0
897
85
4
2455
36
16
14
32
1.89
21972--23033
332
3.3
319
80
7
1133
36
16
14
32
1.89

Tables:   1

The End!