Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021097.1 Corchorus olitorius cultivar O-4 contig21130, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31226

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17325--17648
157
2.1
157
90
4
503
24
13
19
42
1.87
17874--17905
16
2.0
16
93
0
55
9
0
9
81
0.88
19005--19402
22
18.1
22
69
10
161
35
16
10
36
1.84
19012--19635
44
14.7
44
66
16
131
35
15
10
38
1.82
19367--19522
36
4.0
37
74
17
118
34
13
10
41
1.78
19439--19540
22
4.6
23
76
18
92
37
10
10
41
1.75
19665--20049
22
17.6
22
67
16
160
33
16
9
40
1.81
19792--19851
21
2.6
22
84
10
68
35
13
8
43
1.74
19924--20254
44
7.7
43
70
17
167
34
18
9
36
1.84
20054--20285
44
5.2
44
75
8
168
35
16
10
37
1.83
20067--20254
22
8.5
21
77
9
153
35
17
11
35
1.85
20058--20289
66
3.5
68
80
5
251
36
17
9
36
1.83
26892--26924
15
2.1
16
94
5
59
48
18
0
33
1.48
26913--26958
23
2.0
23
95
0
83
50
17
6
26
1.70
29844--29913
36
1.9
36
91
0
113
21
10
8
60
1.55
30429--30839
202
2.0
204
95
0
736
44
8
10
36
1.70

Tables:   1

The End!