Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021102.1 Corchorus olitorius cultivar O-4 contig21135, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8410
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34


Found at i:5115 original size:2 final size:2

Alignment explanation


    Indices: 5108--5138  Score: 53
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       5098 ATGTAACCGA

                                          *               
       5108 AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       5139 GATCACACAG


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48


Consensus pattern (2 bp):   
AT

Done.