Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021105.1 Corchorus olitorius cultivar O-4 contig21138, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20335

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
880--910
16
1.9
16
93
0
53
9
12
0
77
0.99
2052--2100
21
2.3
20
83
10
62
46
10
10
32
1.71
2360--2411
22
2.4
22
93
3
88
50
5
9
34
1.59
2699--2746
23
2.2
22
85
10
64
50
10
10
29
1.70
2714--2757
20
2.1
21
84
12
56
50
11
9
29
1.69
2820--2988
86
2.0
86
96
1
313
49
7
10
33
1.64
3026--3064
20
1.9
20
84
5
51
53
5
5
35
1.45
3032--3080
21
2.4
19
80
12
53
51
6
8
34
1.57
3474--3525
26
1.9
28
88
7
81
59
9
13
17
1.60
8736--8830
42
2.3
42
81
3
111
29
16
31
22
1.96
9015--9143
27
4.8
27
82
7
145
19
31
26
23
1.98
9015--9175
81
2.0
81
85
0
214
21
28
25
24
1.99
9175--9230
27
2.1
27
96
0
103
17
30
32
19
1.95
17260--17374
56
2.1
56
96
0
212
33
11
20
34
1.89
17789--18170
178
2.1
178
83
3
466
37
14
12
35
1.84
18419--18449
11
2.8
11
100
0
62
74
0
6
19
1.03
18587--18627
21
1.9
22
85
5
57
43
29
17
9
1.80
19448--20065
162
3.7
161
74
11
598
46
2
9
41
1.50
20172--20303
2
66.0
2
79
8
135
45
3
4
46
1.38

Tables:   1

The End!