Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021110.1 Corchorus olitorius cultivar O-4 contig21143, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57510

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3003--3039
19
2.0
18
94
5
65
43
8
27
21
1.80
4388--4421
7
4.9
7
100
0
68
44
0
0
55
0.99
12218--12257
12
3.8
11
81
18
50
45
7
0
47
1.31
21090--21584
263
1.8
262
85
8
692
34
12
17
35
1.87
21090--21605
273
1.9
262
84
7
689
34
12
18
35
1.87
23930--23959
8
3.9
8
91
8
53
10
0
0
90
0.47
23931--23959
15
1.9
15
100
0
58
10
0
0
89
0.48
31818--31856
6
6.5
6
81
0
51
64
2
28
5
1.28
44547--44572
11
2.4
11
100
0
52
19
7
26
46
1.77
45661--45716
18
2.7
21
71
23
55
23
21
14
41
1.89
48739--48782
22
2.0
22
86
8
63
29
9
22
38
1.85
54696--54837
72
2.0
72
100
0
284
28
32
19
19
1.96

Tables:   1

The End!