Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021111.1 Corchorus olitorius cultivar O-4 contig21144, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64742

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5402--5554
80
1.9
80
85
9
211
40
7
13
39
1.71
7227--7292
31
2.1
31
83
5
80
31
19
10
37
1.86
7325--7392
31
2.2
31
89
0
100
36
11
16
35
1.85
8501--8532
9
3.7
9
91
8
57
87
0
0
12
0.54
8503--8532
8
3.6
8
91
8
51
90
0
0
10
0.47
11464--11511
24
2.0
23
88
11
71
35
22
4
37
1.74
12792--13257
154
3.0
154
95
0
851
37
17
20
24
1.93
16980--17034
23
2.6
21
91
8
85
32
21
3
41
1.71
21817--21908
31
2.9
31
81
3
112
18
21
25
34
1.96
27507--27543
15
2.5
15
90
0
56
37
0
35
27
1.57
34398--34453
28
2.0
29
92
3
96
23
8
23
44
1.81
39301--39645
36
9.6
36
88
0
357
25
25
23
25
2.00
39331--39681
108
3.3
105
79
4
297
25
23
23
27
2.00
47179--47209
1
31.0
1
100
0
62
0
0
0
100
0.00
47268--47321
27
2.0
27
100
0
108
44
3
18
33
1.67
50268--50552
141
2.0
141
95
2
520
32
13
16
37
1.88
60012--60057
22
2.1
22
91
0
74
45
10
6
36
1.65
62445--62590
79
1.8
79
91
0
238
39
13
11
35
1.80
64707--64739
2
16.5
2
100
0
66
51
0
0
48
1.00

Tables:   1

The End!