Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021112.1 Corchorus olitorius cultivar O-4 contig21145, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32970

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
903--2375
671
2.2
650
83
6
1748
35
15
14
34
1.88
2840--2880
16
2.6
16
79
20
50
43
0
0
56
0.99
3174--3971
333
2.4
337
80
6
831
36
16
14
32
1.89
3986--4085
51
2.0
49
84
7
130
38
16
11
35
1.83
4694--4741
24
2.0
24
84
4
62
60
4
10
25
1.47
6422--6454
3
10.7
3
93
6
57
36
0
0
63
0.95
16731--16778
7
6.9
7
85
0
51
39
6
16
37
1.74
19862--19891
14
2.1
14
93
0
51
63
6
10
20
1.47
20186--20251
24
2.8
24
80
15
75
56
7
16
19
1.64
21231--21387
80
1.9
85
84
8
218
36
21
14
28
1.92
32145--32443
153
2.0
154
84
3
399
33
8
12
45
1.72

Tables:   1

The End!