Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021113.1 Corchorus olitorius cultivar O-4 contig21146, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101544

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3037--3104
34
2.0
35
82
8
86
64
5
20
8
1.43
3457--3485
11
2.6
11
100
0
58
34
0
0
65
0.93
6798--6828
13
2.3
14
94
5
55
58
0
16
25
1.38
16054--17802
348
5.0
347
88
1
2462
35
21
22
20
1.96
16054--17802
701
2.5
694
89
2
2606
35
21
22
20
1.96
34216--34439
121
1.8
122
95
2
407
29
6
12
50
1.65
39197--39255
28
2.1
28
83
3
73
20
16
11
50
1.76
39423--39481
29
2.0
30
90
3
93
52
5
13
28
1.61
50753--50808
18
3.1
19
82
12
64
28
1
0
69
0.98
50753--50801
19
2.5
20
84
15
59
26
2
0
71
0.97
50775--50816
18
2.2
20
83
8
52
33
0
2
64
1.07
60787--60899
57
2.0
57
94
0
199
34
23
1
39
1.66
61287--61820
268
2.0
268
98
0
1023
35
13
15
35
1.87
62465--62542
37
2.0
40
90
7
126
55
3
8
32
1.49
63020--63065
22
2.0
23
84
12
60
28
4
13
54
1.57
63812--63943
45
2.9
45
91
0
219
34
5
21
38
1.76
83309--83423
58
2.0
58
87
3
169
32
14
20
32
1.93
84905--85326
206
2.0
207
90
5
672
43
8
11
36
1.70
85397--85443
25
1.9
24
95
4
85
55
8
6
29
1.55
86883--86951
36
1.9
36
87
0
102
33
14
15
36
1.89
87409--87497
32
2.9
32
90
5
139
34
19
3
42
1.68
88231--88279
25
2.0
25
95
0
89
51
22
0
26
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97356--97396
13
3.0
14
92
7
75
12
14
29
43
1.82
97349--97392
13
3.3
13
90
6
70
11
11
31
45
1.76

Tables:   1

The End!