Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021114.1 Corchorus olitorius cultivar O-4 contig21147, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2639
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36


Found at i:1044 original size:25 final size:23

Alignment explanation


    Indices: 1016--1061  Score: 56
    Period size: 23  Copynumber: 1.9  Consensus size: 23

       1006 TAACTCATAC

                     *               
       1016 AATTGCAAATAAATGTAATTTGGAG
          1 AATTG-AAAGAAA-GTAATTTGGAG

                      *          
       1041 AATTGAAAGATAGTAATTTGG
          1 AATTGAAAGAAAGTAATTTGG

       1062 CTTTTATAGT


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  23    9  0.47
  24    5  0.26
  25    5  0.26

ACGTcount: A:0.43, C:0.02, G:0.22, T:0.33


Consensus pattern (23 bp):   
AATTGAAAGAAAGTAATTTGGAG
Done.