Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021116.1 Corchorus olitorius cultivar O-4 contig21149, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14564

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
366--426
29
2.1
29
87
3
88
22
21
14
40
1.90
3524--3553
15
1.9
16
93
6
53
43
0
3
53
1.17
3688--3718
15
2.1
15
100
0
62
45
0
0
54
0.99
4509--7007
320
7.5
328
73
14
1396
34
13
14
36
1.86
4509--5660
331
3.5
324
80
8
1153
34
14
14
36
1.87
5654--5694
2
20.5
2
94
0
73
46
0
2
51
1.14
6822--7282
260
1.8
251
84
6
638
36
12
13
36
1.83
7043--8922
335
5.7
331
75
10
1434
33
13
15
37
1.86
12196--12258
32
2.0
32
90
6
101
22
14
9
53
1.69
12339--12406
31
2.2
31
89
0
100
16
16
20
47
1.83
13374--13409
2
17.5
2
94
5
63
47
0
2
50
1.15
13647--13695
25
2.0
25
100
0
98
48
8
10
32
1.66

Tables:   1

The End!