Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021118.1 Corchorus olitorius cultivar O-4 contig21151, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3766
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31


Found at i:3005 original size:31 final size:30

Alignment explanation


    Indices: 2966--3067  Score: 84
    Period size: 31  Copynumber: 3.4  Consensus size: 30

       2956 AGTGGATGGA

                                      *     
       2966 CTTATTTGAGACTTTCTGAT-AAGTTGGGGCC
          1 CTTATTTGAGACTTT-T-ATAAAGTTCGGGCC

            *         *                   
       2997 TTTATTTGA-CCTTTTATAAAGTTCGGGCC
          1 CTTATTTGAGACTTTTATAAAGTTCGGGCC

                       *     **           * 
       3026 CTTATTTGAGAGTTATTGCAAAGTTCGGGGAC
          1 CTTATTTGAGACTT-TTATAAAGTTC-GGGCC

                       
       3058 C-TATTTGAGA
          1 CTTATTTGAGA

       3068 TTTCAGCCAA


Statistics
Matches: 58,  Mismatches: 9, Indels: 8
        0.77            0.12        0.11

Matches are distributed among these distances:
  28    2  0.03
  29   19  0.33
  30    6  0.10
  31   26  0.45
  32    5  0.09

ACGTcount: A:0.23, C:0.15, G:0.24, T:0.39


Consensus pattern (30 bp):   
CTTATTTGAGACTTTTATAAAGTTCGGGCC
Done.