Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021120.1 Corchorus olitorius cultivar O-4 contig21153, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59496

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1881--1916
19
1.9
18
88
5
54
27
22
8
41
1.82
2295--2530
125
1.9
124
85
6
325
23
25
25
25
2.00
3363--3387
2
12.5
2
100
0
50
48
0
0
52
1.00
4014--4168
79
2.0
79
98
0
301
37
12
14
36
1.83
5907--5959
24
2.2
24
86
6
72
54
0
0
45
0.99
5902--5961
29
2.1
28
90
3
93
55
0
0
45
0.99
15022--15050
6
4.8
6
100
0
58
34
17
13
34
1.89
17695--17737
21
2.0
21
95
0
77
41
9
39
9
1.69
24267--24306
22
1.9
22
90
10
66
42
17
15
25
1.88
31227--31287
29
2.3
27
86
13
83
54
3
6
36
1.43
31245--31289
12
3.0
16
72
27
53
55
2
6
35
1.38
31467--31492
12
2.2
12
100
0
52
92
7
0
0
0.39
43308--43353
2
23.0
2
100
0
92
0
50
0
50
1.00

Tables:   1

The End!