Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021123.1 Corchorus olitorius cultivar O-4 contig21156, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111522

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1182--1285
32
3.3
31
89
4
102
13
20
31
34
1.91
1231--1283
16
3.3
16
69
10
54
9
16
39
33
1.81
1207--1285
32
2.5
32
95
2
142
11
18
35
34
1.87
1478--1519
21
2.0
22
85
4
59
9
21
28
40
1.84
9347--9394
6
7.8
6
97
2
87
50
33
14
2
1.55
38989--39013
12
2.1
12
100
0
50
36
8
16
40
1.77
39138--39219
40
2.0
40
90
0
128
36
21
13
28
1.91
40784--40832
23
2.2
23
88
3
73
36
4
14
44
1.64
40792--40836
23
2.0
23
100
0
90
35
2
13
48
1.54
42816--42844
14
2.1
14
100
0
58
20
20
0
58
1.39
44444--44487
9
4.9
9
80
0
52
0
68
18
13
1.22
44435--44487
18
2.9
18
85
0
70
1
67
18
11
1.30
44420--44516
27
3.7
27
82
6
94
1
63
21
13
1.35
44420--44496
24
3.1
24
80
14
84
1
66
19
12
1.32
45536--45668
40
3.3
40
100
0
266
12
15
15
56
1.68
51611--51635
13
1.9
13
100
0
50
44
8
0
48
1.32
53367--53403
19
1.9
19
88
0
56
43
13
13
29
1.82
64489--64523
2
17.5
2
87
0
52
42
0
5
51
1.25
68410--68437
13
2.2
13
100
0
56
35
28
0
35
1.58
71153--71177
2
12.5
2
100
0
50
0
0
48
52
1.00
75024--75052
4
7.2
4
100
0
58
24
0
0
75
0.80
88990--89015
12
2.2
12
100
0
52
7
0
0
92
0.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97800--97828
2
14.5
2
100
0
58
48
0
0
51
1.00
99490--99544
27
2.0
27
85
0
74
41
9
7
41
1.64
105793--106037
124
2.0
122
80
6
280
52
2
10
34
1.51
109637--109677
21
1.9
22
85
5
57
43
29
17
9
1.80

Tables:   1

The End!