genome.fa.s21124.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021124.1 Corchorus olitorius cultivar O-4 contig21157, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131118

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13805--13984	90	2.0	90	94	0	315	40	11	30	18	1.86
14036--14150	60	1.9	60	98	0	221	34	8	33	22	1.85
14140--14229	45	1.9	46	91	6	146	30	18	23	27	1.98
21592--21638	2	24.0	2	95	4	87	0	48	0	51	1.00
22176--22832	221	3.0	221	97	0	1206	28	18	19	33	1.95
41637--41693	27	2.1	27	87	3	80	21	8	5	64	1.41
42194--44334	331	6.5	332	78	8	1783	34	14	14	36	1.87
43512--43545	2	17.0	2	100	0	68	50	0	0	50	1.00
44406--46490	330	6.3	325	76	9	1684	33	14	15	35	1.89
44440--46316	659	2.9	649	78	8	1899	34	14	15	36	1.88
46492--46531	12	3.3	12	80	13	55	70	0	5	25	1.08
46501--47162	333	2.0	330	87	3	945	33	15	14	35	1.89
47652--47682	12	2.6	12	94	0	53	0	19	32	48	1.49
48538--50704	332	7.0	297	73	12	1361	32	15	14	36	1.89
48827--50116	332	3.9	331	87	2	1671	32	15	14	36	1.89
51392--53722	329	7.1	328	77	9	1976	33	14	15	37	1.88
51429--53722	663	3.5	646	77	10	2173	32	14	15	37	1.88
67077--67143	29	2.3	29	81	2	80	23	13	14	47	1.80
67408--67504	45	2.2	44	85	7	137	41	20	4	34	1.72
69417--69453	19	2.0	19	89	5	58	35	0	0	64	0.94
86972--87027	29	2.0	29	96	3	105	41	19	10	28	1.85
92154--92184	15	2.1	15	100	0	62	29	25	12	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100394--100459	32	2.0	33	97	2	125	18	18	31	31	1.95
108613--108651	19	2.1	19	100	0	78	35	25	5	33	1.78
121365--121396	2	16.0	2	93	0	55	50	3	0	46	1.17
121983--122039	27	2.1	27	96	0	105	33	10	26	29	1.90
125316--125344	2	14.5	2	100	0	58	48	0	0	51	1.00
127251--127331	40	2.0	40	90	0	126	27	13	18	40	1.88
127330--127366	13	2.8	13	87	0	56	32	8	43	16	1.77
127968--127994	2	13.5	2	100	0	54	48	0	0	51	1.00

Tables:   1

The End!