Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021126.1 Corchorus olitorius cultivar O-4 contig21159, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140527

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3032--3089
19
2.9
20
82
5
64
37
12
17
32
1.86
3032--3090
21
2.9
21
82
5
68
37
11
16
33
1.86
8061--8094
16
2.2
16
89
5
52
44
5
0
50
1.26
18369--18430
31
2.0
31
93
0
106
33
17
6
41
1.75
21096--21315
110
2.0
110
95
0
395
27
18
14
40
1.89
27145--27209
15
4.5
15
77
11
64
23
35
16
24
1.95
28173--28209
19
1.9
19
94
0
65
16
35
13
35
1.88
28319--28386
33
2.1
33
97
0
127
35
32
19
13
1.90
28391--28508
59
2.0
59
100
0
236
37
10
13
38
1.79
30545--30574
2
15.0
2
100
0
60
50
0
0
50
1.00
31674--31938
131
2.0
131
88
3
390
49
1
10
38
1.48
35450--35482
1
33.0
1
100
0
66
0
0
0
100
0.00
36368--36404
2
19.5
2
83
10
51
51
2
45
0
1.15
36368--36404
7
4.9
8
83
12
51
51
2
45
0
1.15
36368--36404
11
3.3
11
96
3
65
51
2
45
0
1.15
48551--48813
134
2.0
134
93
1
447
37
19
9
34
1.83
52411--52455
22
2.0
22
100
0
90
51
0
17
31
1.46
52540--52611
36
2.0
36
94
0
126
11
33
11
44
1.75
52585--52854
134
2.0
134
93
0
459
35
20
9
34
1.86
77560--77715
73
2.1
73
94
2
269
35
14
18
31
1.91
78919--79063
60
2.4
60
92
0
236
31
12
18
37
1.88
81230--81284
27
2.0
27
89
0
83
45
16
10
27
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81276--81312
17
2.2
17
95
0
65
40
8
10
40
1.70
109255--109329
28
2.7
28
100
0
150
37
14
4
44
1.64
109442--109467
2
13.0
2
100
0
52
50
0
0
50
1.00
109696--109739
21
2.1
21
95
0
79
54
13
6
25
1.63
109740--109788
25
2.0
25
95
0
89
46
18
18
16
1.84
111205--111248
21
2.1
21
95
0
79
54
13
6
25
1.63
111249--111297
25
2.0
25
91
0
80
46
16
18
18
1.84
115182--115219
3
12.7
3
100
0
76
65
0
34
0
0.93
116277--116336
29
2.1
29
93
0
102
20
5
20
55
1.62
117262--117326
28
2.2
30
94
5
116
24
29
13
32
1.94
130187--130219
17
1.9
17
93
0
57
9
3
6
81
0.95
130186--130219
18
1.9
17
94
5
59
8
2
5
82
0.93
137456--137530
35
2.1
35
97
0
141
22
17
18
41
1.90
137976--138207
58
4.0
58
96
2
412
44
13
25
15
1.84
137976--138207
117
2.0
116
94
2
412
44
13
25
15
1.84

Tables:   1

The End!