Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021128.1 Corchorus olitorius cultivar O-4 contig21161, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56169

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
502--572
32
2.2
32
84
0
88
49
18
11
21
1.78
919--953
18
1.9
18
94
0
61
28
8
11
51
1.67
6038--6070
4
8.2
4
93
0
57
30
24
0
45
1.53
6037--6083
12
3.8
12
88
2
67
34
25
0
40
1.56
6904--6930
2
13.5
2
100
0
54
48
0
0
51
1.00
13949--14012
21
3.2
20
84
8
76
37
12
20
29
1.89
16881--16939
29
2.0
29
100
0
118
40
33
3
22
1.70
25809--25978
38
4.5
38
86
2
225
12
35
29
21
1.91
28058--28124
33
2.1
33
97
2
127
31
8
10
49
1.68
30595--30637
20
2.2
20
83
8
52
37
16
13
32
1.88
39461--39511
19
2.5
20
84
6
68
37
11
15
35
1.84
45570--45614
13
3.2
13
81
12
54
17
8
28
44
1.79
50768--50800
15
2.1
16
88
5
50
0
24
0
75
0.80

Tables:   1

The End!