Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021130.1 Corchorus olitorius cultivar O-4 contig21163, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38565

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5796--5857
30
2.1
30
96
0
115
45
4
24
25
1.73
7480--7504
13
1.9
13
100
0
50
44
0
16
40
1.47
7901--8001
31
3.3
31
87
0
139
14
23
27
33
1.94
15400--15439
18
2.2
19
86
4
55
5
10
12
72
1.26
17139--17197
19
3.0
19
80
5
64
33
16
11
37
1.86
28292--28438
31
4.8
30
80
5
107
15
21
25
37
1.93
28316--28441
31
4.1
31
82
0
153
15
21
26
37
1.92
32352--32395
18
2.4
18
80
0
52
20
59
4
15
1.54
32424--32551
63
2.0
65
82
8
149
11
58
9
20
1.60
32502--32626
45
2.8
45
83
2
153
16
63
7
12
1.50
32443--32593
60
2.5
61
79
5
144
13
62
7
15
1.51
32479--32590
30
3.7
30
79
2
118
12
66
6
15
1.43
32494--32611
15
7.9
15
78
0
83
13
64
6
15
1.48
32535--32626
15
6.1
15
80
0
76
19
63
7
9
1.49

Tables:   1

The End!