Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021131.1 Corchorus olitorius cultivar O-4 contig21164, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14012

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1102--1480
179
2.1
178
85
2
528
36
15
14
33
1.88
2503--2872
184
2.0
184
100
0
740
35
17
19
27
1.94
2687--6720
332
12.1
327
77
9
3244
37
15
13
32
1.88
2687--6720
330
12.1
328
77
8
3328
37
15
13
32
1.88
6728--6896
31
5.5
31
67
16
102
33
17
19
29
1.95
6759--6862
30
3.5
29
71
17
88
31
15
21
31
1.94
6727--6891
61
2.7
61
88
4
246
33
16
19
30
1.94
6935--7102
31
5.5
31
69
16
127
28
18
19
33
1.96
6933--7099
60
2.8
60
89
0
253
28
18
19
34
1.95
7786--7845
29
2.1
29
87
0
84
48
5
15
31
1.66
9713--9789
38
2.0
38
97
0
145
38
19
5
36
1.74
11359--11402
22
2.0
22
100
0
88
27
36
9
27
1.87
11757--11824
29
2.3
31
82
5
77
30
10
22
36
1.87
12256--12285
4
7.5
4
100
0
60
76
0
0
23
0.78
13821--13865
15
2.9
14
84
15
54
44
0
6
48
1.29

Tables:   1

The End!