Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021132.1 Corchorus olitorius cultivar O-4 contig21165, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72285

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2953--7182
332
12.8
331
78
7
3787
36
15
14
33
1.88
7418--7445
13
2.2
13
100
0
56
67
0
0
32
0.91
7539--7572
15
2.1
17
89
10
54
52
5
0
41
1.25
7771--7846
37
2.1
37
94
0
134
35
11
9
43
1.73
7858--7896
5
8.2
5
88
11
64
56
0
20
23
1.42
7851--7905
23
2.5
23
91
5
87
52
0
23
23
1.47
7855--7892
18
2.1
18
100
0
76
55
0
21
23
1.44
12445--12501
20
2.6
23
75
18
66
42
12
14
31
1.82
18999--19067
29
2.4
28
85
7
86
40
30
11
17
1.85
19767--19812
23
2.0
23
95
0
83
54
10
4
30
1.55
19771--19830
23
2.6
23
83
0
66
56
8
3
31
1.45
22062--22152
43
2.1
45
89
8
143
48
10
7
32
1.67
22662--22707
15
3.0
15
81
15
58
43
6
10
39
1.66
22701--22767
21
3.2
22
83
12
79
37
13
8
40
1.76
23613--23639
12
2.2
12
100
0
54
51
7
11
29
1.64
25246--25304
28
2.1
28
100
0
118
28
13
13
44
1.82
29669--32086
333
7.4
328
76
8
2073
36
15
14
33
1.88
28411--32086
331
11.2
326
76
9
2990
36
15
14
33
1.88
53076--53155
31
2.6
31
86
4
108
20
25
11
43
1.84
53283--53410
63
2.0
63
98
0
247
39
11
21
26
1.88
53301--53409
31
3.5
31
71
13
107
42
12
19
25
1.87
61992--62091
47
2.0
47
88
9
146
42
5
9
44
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63111--63344
22
10.7
22
77
8
199
39
17
10
32
1.84
64048--65071
334
3.1
327
78
7
997
35
15
15
33
1.89
65114--65142
2
14.5
2
100
0
58
51
0
0
48
1.00
65623--65674
21
2.5
21
76
14
54
57
5
1
34
1.33
65994--66073
21
3.8
21
81
8
99
40
10
10
40
1.72
66102--66179
21
3.6
21
77
10
77
29
11
10
48
1.72
66117--66202
42
2.0
43
82
6
104
25
13
9
51
1.71
68784--68810
10
2.7
10
100
0
54
81
7
11
0
0.87
69151--69244
45
2.2
43
88
7
138
38
21
5
35
1.76
71497--71539
2
21.5
2
95
0
77
48
2
0
48
1.14
72154--72178
12
2.1
12
100
0
50
24
28
16
32
1.96
72249--72278
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!