Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021133.1 Corchorus olitorius cultivar O-4 contig21166, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6421

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--48
2
22.0
2
95
0
79
50
2
0
47
1.13
112--184
22
3.4
22
77
9
78
41
12
8
38
1.73
105--214
43
2.6
43
77
12
111
39
16
5
39
1.72
1192--1232
21
1.9
22
90
5
66
41
19
7
31
1.79
1237--1488
22
11.9
21
65
19
87
35
12
9
42
1.74
1195--1301
43
2.5
43
82
1
124
36
13
7
42
1.72
1389--1446
19
2.8
19
78
19
55
39
8
12
39
1.73
2228--2307
42
1.9
42
97
0
151
38
13
23
23
1.91
2488--2517
6
4.8
6
95
4
51
36
13
0
50
1.42
2734--2814
39
2.0
40
92
2
137
50
8
3
37
1.51
2805--2851
25
1.9
24
95
4
85
29
6
8
55
1.55
2923--3333
201
2.0
204
92
2
695
36
10
8
44
1.70
3845--3914
36
1.9
36
91
0
113
60
8
10
21
1.55
4955--5051
45
2.2
45
84
1
124
38
19
5
37
1.74

Tables:   1

The End!