Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021134.1 Corchorus olitorius cultivar O-4 contig21167, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  197376

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5519--5556
2
19.5
2
94
5
69
50
0
0
50
1.00
5881--5934
25
2.2
25
96
0
99
37
9
0
53
1.33
5733--6084
186
1.9
190
92
3
604
43
6
8
41
1.61
6448--6494
24
2.0
24
87
8
69
14
17
10
57
1.65
8215--8486
135
2.0
139
89
3
417
34
12
9
43
1.75
9341--9413
28
2.5
29
84
8
94
30
16
26
27
1.97
9359--9414
28
2.0
29
96
3
105
26
17
26
28
1.98
11279--11348
36
1.9
36
94
5
124
61
5
8
24
1.47
13808--13848
3
13.7
3
89
0
64
0
26
0
73
0.84
13804--13845
12
3.4
12
96
3
75
0
26
0
73
0.83
21707--21734
12
2.3
12
100
0
56
0
17
32
50
1.47
24555--24622
33
2.1
33
100
0
136
66
5
5
22
1.36
37089--38858
650
2.7
655
82
6
2098
34
14
16
35
1.89
42540--42607
35
1.9
35
96
0
127
35
22
2
39
1.69
42732--42764
17
1.9
17
88
11
50
66
0
6
27
1.15
50055--50124
29
2.3
31
87
9
108
30
31
18
20
1.96
69374--69410
19
2.1
19
85
10
51
67
2
5
24
1.25
70386--70426
18
2.4
18
92
8
68
82
0
9
7
0.83
75360--75764
204
2.0
204
91
0
657
36
17
18
27
1.93
80290--80314
3
8.3
3
100
0
50
0
36
0
64
0.94
82172--82201
1
30.0
1
100
0
60
0
0
0
100
0.00
82961--83423
152
3.0
150
83
8
552
28
12
20
38
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95297--95328
15
2.1
15
94
0
55
34
9
50
6
1.60
99139--99271
67
2.0
67
95
0
239
16
19
26
37
1.93
103863--103893
1
31.0
1
100
0
62
100
0
0
0
0.00
106424--106457
17
2.0
17
88
0
50
47
2
50
0
1.16
109177--109205
11
2.6
11
100
0
58
10
10
55
24
1.65
109333--109369
19
1.9
19
94
0
65
40
13
29
16
1.86
117220--117249
2
15.0
2
100
0
60
50
0
0
50
1.00
144206--144253
19
2.5
19
96
0
87
25
31
4
39
1.74
150087--150119
7
4.7
7
85
14
50
57
0
0
42
0.98
162092--162173
32
2.5
33
84
15
123
20
7
29
42
1.79
162108--162173
31
2.1
31
91
5
107
21
6
27
45
1.75
179502--179529
9
3.1
9
100
0
56
10
0
0
89
0.49
189633--189675
3
14.3
3
100
0
86
67
0
0
32
0.91
191544--191581
2
19.0
2
100
0
76
50
0
0
50
1.00
196980--197011
16
2.0
16
93
0
55
53
0
0
46
1.00
196964--197011
19
2.5
19
83
10
62
47
0
0
52
1.00
197143--197177
18
1.9
18
94
0
61
28
8
11
51
1.67

Tables:   1

The End!