genome.fa.s21135.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021135.1 Corchorus olitorius cultivar O-4 contig21168, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151667

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572--598	2	13.5	2	100	0	54	51	0	0	48	1.00
4877--4925	17	2.8	17	87	6	62	6	14	4	75	1.14
13989--14047	29	2.0	29	96	0	109	20	15	8	55	1.65
26464--26535	36	2.0	35	94	2	126	33	12	1	52	1.48
28706--28761	19	2.7	21	78	13	62	50	1	0	48	1.11
29650--29766	53	2.2	53	90	0	189	27	16	16	40	1.89
30157--30195	8	5.4	7	85	14	53	87	10	0	2	0.65
30157--30195	15	2.7	15	92	4	62	87	10	0	2	0.65
35967--35993	14	1.9	14	100	0	54	7	37	11	44	1.68
40551--40601	19	2.7	20	85	8	63	54	0	0	45	0.99
40549--40625	21	3.6	19	74	20	55	53	2	0	44	1.14
46159--46192	2	17.0	2	100	0	68	50	0	0	50	1.00
48972--48996	4	6.2	4	100	0	50	76	0	0	24	0.80
54431--54550	61	2.0	61	98	0	231	34	18	20	27	1.95
56027--56309	95	3.0	95	98	0	539	34	23	12	30	1.91
56282--56333	24	2.2	24	92	0	86	38	21	11	28	1.88
58415--58457	4	10.5	4	80	5	50	0	30	0	69	0.88
58415--58450	8	4.5	8	96	0	63	0	33	0	66	0.92
60194--60269	27	2.8	27	91	0	125	14	25	14	46	1.82
60330--60465	45	3.0	45	94	2	238	34	25	25	15	1.95
66884--67140	105	2.5	105	84	6	326	43	8	7	39	1.65
87154--87211	19	2.9	19	82	9	80	37	12	18	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87154--87212	21	2.9	21	87	5	86	37	11	18	32	1.87
89971--90004	14	2.4	14	100	0	68	64	8	26	0	1.22
96561--96605	1	45.0	1	100	0	90	0	0	0	100	0.00
103425--103468	23	1.9	23	100	0	88	13	31	0	54	1.39
103428--103475	23	2.2	22	81	7	53	16	33	4	45	1.67
106716--106862	75	2.0	75	97	0	276	33	17	14	34	1.90
118758--118807	20	2.5	19	77	6	55	6	12	10	72	1.28
121124--121244	61	2.0	60	85	7	165	33	23	11	31	1.91
126004--126261	133	1.9	133	96	0	480	28	18	18	34	1.95
126552--126578	13	2.1	13	100	0	54	62	0	0	37	0.95
131048--131123	24	3.2	24	92	0	125	36	22	31	9	1.86
131153--131179	6	4.5	6	100	0	54	37	18	29	14	1.91
134856--134966	24	4.4	24	80	12	123	35	19	32	12	1.90
134898--134978	30	2.7	30	92	0	126	33	17	34	14	1.90
135010--135082	27	2.5	29	78	13	87	27	39	1	31	1.65
135026--135082	27	2.1	27	93	0	96	26	40	1	31	1.66
138966--139089	24	5.2	24	93	0	212	35	20	32	12	1.89
138985--139139	24	5.5	30	72	15	100	36	20	32	10	1.87
144737--144762	6	4.3	6	100	0	52	15	30	15	38	1.88
145932--145968	19	2.0	19	94	5	67	67	0	0	32	0.91
146811--146837	5	5.4	5	100	0	54	22	18	0	59	1.38
147694--148277	317	1.8	316	82	5	759	32	14	15	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148493--148517	2	12.5	2	100	0	50	52	0	0	48	1.00
149822--151371	653	2.4	642	79	7	1529	32	14	16	36	1.89
149822--151665	334	5.6	330	77	8	1749	32	14	16	36	1.89

Tables:   1

The End!