Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021137.1 Corchorus olitorius cultivar O-4 contig21170, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117218

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
406--564
69
2.3
70
93
4
270
27
45
6
20
1.76
480--657
93
1.9
95
82
8
229
26
47
4
20
1.69
7105--7141
18
2.1
18
100
0
74
27
27
21
24
1.99
7316--7347
15
2.1
15
100
0
64
25
12
18
43
1.85
25966--26033
21
3.2
21
85
0
73
25
7
52
14
1.67
25978--26038
21
2.9
21
87
0
86
24
4
54
16
1.62
35946--35995
24
2.1
24
84
0
64
28
8
6
58
1.51
41301--41363
30
2.1
30
93
0
108
20
15
14
49
1.80
41749--41783
18
1.9
18
88
11
54
42
11
11
34
1.77
43154--43183
1
30.0
1
93
0
51
0
3
0
96
0.21
43149--43183
13
2.8
13
91
4
54
0
8
0
91
0.42
44125--44284
67
2.4
65
82
8
189
29
18
22
30
1.97
44166--44560
162
2.5
162
92
4
640
28
17
21
32
1.96
44418--44691
110
2.8
96
81
14
324
29
17
20
32
1.96
44552--44648
49
2.0
47
84
9
126
30
22
17
28
1.97
44484--44780
110
2.7
110
91
4
471
27
18
20
32
1.96
46684--46721
19
2.0
19
100
0
76
31
15
10
42
1.81
52564--52723
66
2.4
67
82
9
193
30
17
23
28
1.97
52923--52969
22
2.1
22
96
0
85
36
12
12
38
1.82
54454--54702
63
3.9
65
77
6
217
30
15
22
31
1.95
68956--68985
15
1.9
16
93
6
53
43
0
3
53
1.17
69433--70150
331
2.2
331
82
7
832
33
13
13
38
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70387--73200
332
8.5
330
80
5
2806
33
14
15
36
1.88
70390--73200
329
8.5
328
80
6
2708
33
14
15
36
1.88
77705--77772
33
2.1
33
88
5
102
19
66
10
4
1.39
97930--97960
16
1.9
16
93
0
53
9
9
38
41
1.71
98548--98663
46
2.4
51
91
7
188
19
9
15
55
1.68
98548--98663
51
2.4
46
88
7
160
19
9
15
55
1.68
98612--98641
10
3.0
10
95
0
51
0
0
13
86
0.57

Tables:   1

The End!