Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021138.1 Corchorus olitorius cultivar O-4 contig21171, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76421

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26740--26772
15
2.2
15
100
0
66
30
24
6
39
1.79
27045--27094
23
2.2
23
92
0
82
18
12
28
42
1.85
35320--35365
24
1.9
24
81
0
56
63
10
19
6
1.48
41696--41798
51
2.0
51
96
0
188
44
17
7
30
1.77
41800--41850
25
2.0
25
100
0
102
60
19
0
19
1.36
41855--41976
61
2.0
61
95
0
217
44
27
6
22
1.77
47893--47986
45
2.1
45
97
0
179
31
22
13
31
1.93
50012--50036
6
4.2
6
100
0
50
36
16
16
32
1.90
50628--50661
3
11.3
3
100
0
68
67
0
32
0
0.91
55054--55080
2
13.5
2
100
0
54
48
0
0
51
1.00
61244--61389
78
1.9
80
88
2
224
26
14
10
48
1.76
61965--62001
19
1.9
19
88
0
56
45
13
10
29
1.77
68284--68347
27
2.5
25
82
9
92
23
15
6
54
1.64
71880--76421
333
13.7
330
79
8
3653
36
15
15
32
1.89
72749--73023
143
1.9
144
83
4
358
34
17
20
27
1.95
73037--76421
332
10.3
334
84
5
3978
36
15
14
33
1.88
73037--76421
662
5.1
661
83
5
3978
36
15
14
33
1.88

Tables:   1

The End!