genome.fa.s21139.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021139.1 Corchorus olitorius cultivar O-4 contig21172, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142404

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3--5534	658	8.4	658	79	7	4884	35	15	15	32	1.90
5603--5668	27	2.4	26	87	7	87	43	3	9	43	1.51
5592--5770	96	1.9	95	85	3	252	53	4	7	34	1.49
5709--5762	25	2.1	25	83	16	67	51	1	3	42	1.30
8824--8864	21	1.9	22	90	5	66	36	9	14	39	1.79
10220--10270	22	2.2	24	83	16	72	41	0	0	58	0.98
10220--10268	25	2.0	25	84	8	64	40	0	0	59	0.98
11857--12066	114	1.8	114	86	2	305	27	25	13	33	1.94
26198--26236	15	2.6	15	87	0	60	76	0	23	0	0.78
30781--30890	27	3.9	27	74	17	116	22	38	17	21	1.93
30790--30905	58	2.0	58	100	0	232	27	37	17	17	1.92
48016--48041	6	4.3	6	100	0	52	34	15	34	15	1.89
60752--60784	13	2.3	15	90	10	52	75	3	9	12	1.14
93894--94006	58	1.9	58	92	0	190	30	30	19	19	1.96
98913--98974	30	2.1	30	90	6	99	32	17	16	33	1.92
100801--100878	24	3.5	25	66	27	57	34	2	14	48	1.57
100796--100878	42	2.0	42	92	0	139	34	2	13	49	1.55
112724--112768	1	45.0	1	100	0	90	0	0	0	100	0.00
127663--127704	18	2.2	20	87	8	61	45	11	9	33	1.73
130270--130354	31	2.7	31	82	7	102	47	3	5	43	1.44
140778--141193	84	5.0	84	92	0	636	17	18	26	38	1.92
141216--141256	21	2.0	21	85	0	55	19	29	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142116--142159	24	1.9	23	86	9	63	36	9	2	52	1.46

Tables:   1

The End!