Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021142.1 Corchorus olitorius cultivar O-4 contig21175, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43356

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8356--8387
2
16.0
2
93
0
55
46
0
3
50
1.17
8421--8448
2
14.0
2
100
0
56
50
0
0
50
1.00
15738--15785
25
1.9
25
100
0
96
27
16
10
45
1.80
23531--23604
29
2.6
29
76
4
78
44
17
20
17
1.87
26563--26666
43
2.4
43
80
7
113
35
11
15
37
1.84
26559--26793
65
3.5
65
80
7
215
34
10
17
37
1.84
26559--26780
22
10.0
22
70
16
131
33
10
18
38
1.84
26840--26915
22
3.5
21
75
8
62
39
5
19
35
1.75
26938--27193
88
2.9
89
76
10
231
41
10
15
32
1.80
26938--27823
22
40.2
22
66
17
202
39
10
16
34
1.82
27242--27397
64
2.4
66
80
8
160
42
8
16
32
1.79
27440--27502
23
2.7
23
90
0
90
38
6
19
36
1.77
27274--27823
22
25.3
22
70
13
239
38
10
16
34
1.83
27592--27680
45
2.0
45
84
4
117
32
11
17
38
1.86
27833--27875
22
2.0
22
90
0
68
39
6
9
44
1.64
34893--34918
10
2.6
10
100
0
52
42
38
19
0
1.51
37752--37782
13
2.5
13
94
5
55
32
25
9
32
1.88

Tables:   1

The End!