genome.fa.s21143.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021143.1 Corchorus olitorius cultivar O-4 contig21176, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114085

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
816--857	12	3.5	12	83	0	57	33	40	26	0	1.56
832--896	3	21.7	3	75	6	51	33	32	29	4	1.78
2073--2109	18	2.1	18	94	0	65	29	10	13	45	1.77
10902--11141	130	1.8	130	97	0	453	39	20	13	26	1.90
21021--21296	152	1.8	150	79	5	322	34	19	18	26	1.95
39758--39816	30	2.0	30	93	0	100	27	23	1	47	1.61
49751--49785	11	3.2	11	91	0	61	0	2	17	80	0.84
52737--52818	41	2.0	41	92	0	137	41	19	12	26	1.87
52918--52949	13	2.5	13	100	0	64	34	6	46	12	1.67
57183--57268	40	2.1	40	86	2	118	40	20	10	27	1.85
61512--61540	6	5.0	6	95	4	51	34	17	0	48	1.47
61628--61842	116	1.8	116	86	3	306	36	13	1	48	1.53
63401--63461	30	2.0	30	100	0	122	52	9	22	14	1.71
66495--66543	26	1.9	25	84	12	64	55	0	2	42	1.11
66644--66703	29	2.0	30	87	3	86	45	3	0	51	1.17
67167--69715	332	7.8	331	76	8	2087	36	15	14	33	1.88
69849--69901	21	2.5	21	77	14	56	58	3	3	33	1.34
69887--69926	17	2.3	18	91	8	66	57	2	0	40	1.12
76148--76197	25	2.0	25	84	0	64	36	12	22	30	1.90
78441--80793	334	7.1	327	75	11	1839	32	13	16	37	1.88
84986--85045	31	1.9	31	86	0	84	26	25	15	33	1.95
87451--87482	16	2.0	16	93	0	55	53	0	3	43	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97032--99025	321	6.3	316	77	10	1652	32	15	16	35	1.90
99976--100097	61	2.0	61	98	0	235	37	10	18	33	1.85
102882--102946	33	2.0	32	85	11	89	23	13	44	18	1.85
110989--111399	30	13.6	30	92	0	615	30	18	19	31	1.96
111342--111448	32	3.3	32	70	7	108	36	14	13	36	1.84
111012--111464	60	7.4	62	90	2	343	31	17	18	32	1.94

Tables:   1

The End!