Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021145.1 Corchorus olitorius cultivar O-4 contig21178, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5167
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33


Found at i:2715 original size:18 final size:19

Alignment explanation


    Indices: 2669--2709  Score: 66
    Period size: 20  Copynumber: 2.2  Consensus size: 19

       2659 TTGCTTGATT

                                
       2669 AGAACAGAGTCTTTTTTAAG
          1 AGAACAGAGTCTTTTTT-AG

                               
       2689 AGAACAGAGTCTTTTTT-G
          1 AGAACAGAGTCTTTTTTAG

               
       2707 AGA
          1 AGA

       2710 TAAGAGAACA


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  18    4  0.19
  20   17  0.81

ACGTcount: A:0.34, C:0.10, G:0.22, T:0.34


Consensus pattern (19 bp):   
AGAACAGAGTCTTTTTTAG

Found at i:4708 original size:15 final size:15

Alignment explanation


    Indices: 4688--4717  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       4678 AATGTCATTC

                           
       4688 CCACCACTTTCCCAT
          1 CCACCACTTTCCCAT

                           
       4703 CCACCACTTTCCCAT
          1 CCACCACTTTCCCAT

       4718 TCAAGTGGAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.20, C:0.53, G:0.00, T:0.27


Consensus pattern (15 bp):   
CCACCACTTTCCCAT
Done.