Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021147.1 Corchorus olitorius cultivar O-4 contig21180, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60734

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21--535
285
1.8
285
90
2
829
34
12
14
38
1.84
235--4590
333
13.1
333
88
3
6156
33
13
15
37
1.86
9852--9881
14
2.1
14
100
0
60
26
30
16
26
1.97
11557--11705
81
1.9
79
87
5
219
33
14
13
38
1.86
15808--15843
12
2.9
12
91
4
54
38
11
0
50
1.38
16964--17033
36
1.9
36
94
0
122
60
7
10
22
1.53
23136--23177
13
3.3
13
80
6
59
54
0
4
40
1.21
24134--24174
19
2.0
21
86
9
59
56
7
7
29
1.54
24680--24718
12
3.2
12
78
7
51
74
0
2
23
0.94
24922--24951
7
4.3
7
100
0
60
33
0
0
66
0.92
30732--30757
2
13.0
2
100
0
52
50
0
0
50
1.00
33870--33905
17
2.1
17
89
0
54
38
19
11
30
1.86
36323--36382
18
3.3
18
76
0
66
28
25
26
20
1.99
41963--42184
114
2.0
113
95
2
401
48
9
6
36
1.61
49594--49868
22
12.7
22
78
6
265
38
12
17
30
1.87
55358--55442
41
2.1
41
90
0
134
36
18
10
34
1.86
58672--58713
22
2.0
21
86
13
59
42
0
0
57
0.99

Tables:   1

The End!