Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021152.1 Corchorus olitorius cultivar O-4 contig21185, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 884

Length: 1474
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33


Found at i:1389 original size:2 final size:2

Alignment explanation


    Indices: 1374--1411  Score: 60
    Period size: 2  Copynumber: 19.5  Consensus size: 2

       1364 CCCCTCTCTC

                   *                                                  
       1374 TA TA TG TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1412 TATTTATAAG


Statistics
Matches: 33,  Mismatches: 2, Indels: 2
        0.89            0.05        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   32  0.97

ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50


Consensus pattern (2 bp):   
TA

Done.