Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021155.1 Corchorus olitorius cultivar O-4 contig21188, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48430

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
497--562
31
2.1
32
88
5
100
33
16
10
39
1.83
4635--4693
3
19.7
3
100
0
118
66
0
0
33
0.92
9625--9678
22
2.3
24
81
15
69
24
18
5
51
1.67
9859--10081
121
1.8
121
83
12
296
38
17
20
24
1.93
10443--10472
16
1.9
15
93
6
51
86
0
10
3
0.67
13513--13545
2
17.5
2
87
12
52
48
0
0
51
1.00
13516--13551
10
3.4
10
92
7
54
50
0
0
50
1.00
13520--13557
16
2.2
18
90
9
62
50
0
0
50
1.00
21038--21117
40
2.0
40
90
0
124
35
13
5
46
1.65
21153--21407
128
2.0
130
85
6
347
39
10
20
29
1.86
22963--23028
30
2.2
30
86
7
91
40
4
16
37
1.69
24307--24350
19
2.2
19
84
8
52
15
6
9
68
1.38
32229--32266
17
2.4
17
87
12
55
7
13
39
39
1.73
32922--32952
1
31.0
1
93
0
53
0
0
3
96
0.21
34885--34941
16
3.6
16
80
4
71
8
10
40
40
1.71
34950--34990
16
2.5
17
76
15
50
4
14
36
43
1.67
36899--36929
14
2.3
14
94
5
55
16
6
0
77
0.97
44726--44756
13
2.4
13
100
0
62
16
22
19
41
1.89
45208--45295
29
3.0
29
80
3
97
44
34
10
11
1.74

Tables:   1

The End!