Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021157.1 Corchorus olitorius cultivar O-4 contig21190, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3934
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31


Found at i:2202 original size:21 final size:21

Alignment explanation


    Indices: 2169--2209  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2159 CTTTAGGAAT

                   **            
       2169 GCAAGAGGGATTTCAAAGAAA
          1 GCAAGAGCCATTTCAAAGAAA

                          *     
       2190 GCAAGAGCCATTTCCAAGAA
          1 GCAAGAGCCATTTCAAAGAA

       2210 GTTACAATTC


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.44, C:0.17, G:0.24, T:0.15


Consensus pattern (21 bp):   
GCAAGAGCCATTTCAAAGAAA
Done.