Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021159.1 Corchorus olitorius cultivar O-4 contig21192, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3048
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38


Found at i:1312 original size:29 final size:29

Alignment explanation


    Indices: 1270--1325  Score: 78
    Period size: 29  Copynumber: 1.9  Consensus size: 29

       1260 TGTCCCTCTG

                            *            
       1270 AAAAAAAACAAAAGAGTGTTAGTAACCTC
          1 AAAAAAAACAAAAGAGAGTTAGTAACCTC

                           *            
       1299 AAAAGAAAA-AAAAGGGAGTTAGTAACC
          1 AAAA-AAAACAAAAGAGAGTTAGTAACC

       1326 CCTAAATCAT


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  29   20  0.83
  30    4  0.17

ACGTcount: A:0.57, C:0.11, G:0.18, T:0.14


Consensus pattern (29 bp):   
AAAAAAAACAAAAGAGAGTTAGTAACCTC
Done.