Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021161.1 Corchorus olitorius cultivar O-4 contig21194, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4049
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31


Found at i:2530 original size:21 final size:21

Alignment explanation


    Indices: 2500--2549  Score: 66
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       2490 AGGGATCGAG

                          *       
       2500 CTGGGCGCTGA-GCCTTGTCGC
          1 CTGGGCGCTGAGGCATT-TCGC

                 *               
       2521 CTGGGTGCTGAGGCATTTCGC
          1 CTGGGCGCTGAGGCATTTCGC

                    
       2542 CTGGGCGC
          1 CTGGGCGC

       2550 CCAGCGGCAA


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  21   21  0.84
  22    4  0.16

ACGTcount: A:0.06, C:0.30, G:0.40, T:0.24


Consensus pattern (21 bp):   
CTGGGCGCTGAGGCATTTCGC
Done.