Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021164.1 Corchorus olitorius cultivar O-4 contig21197, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2273
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:1268 original size:21 final size:21

Alignment explanation


    Indices: 1244--1294  Score: 59
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       1234 GTGACACTGC

                      *           
       1244 CCACCTGGGTTCTCAA-GCAAA
          1 CCACCTGGGTGCTCAAGGC-AA

                *                
       1265 CCACATGGGTGCTCAAGGCAA
          1 CCACCTGGGTGCTCAAGGCAA

               *     
       1286 CCATCTGGG
          1 CCACCTGGG

       1295 CGCCCAGGTG


Statistics
Matches: 25,  Mismatches: 4, Indels: 2
        0.81            0.13        0.06

Matches are distributed among these distances:
  21   23  0.92
  22    2  0.08

ACGTcount: A:0.25, C:0.31, G:0.25, T:0.18


Consensus pattern (21 bp):   
CCACCTGGGTGCTCAAGGCAA
Done.