Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021165.1 Corchorus olitorius cultivar O-4 contig21198, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3875
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28


Found at i:2699 original size:13 final size:13

Alignment explanation


    Indices: 2681--2706  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       2671 TTTTTTTTCT

                         
       2681 TAAAGTATTCACC
          1 TAAAGTATTCACC

                         
       2694 TAAAGTATTCACC
          1 TAAAGTATTCACC

       2707 GTATTTCCTC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31


Consensus pattern (13 bp):   
TAAAGTATTCACC
Done.