Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021171.1 Corchorus olitorius cultivar O-4 contig21204, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72291

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2003--2225
61
3.6
60
84
5
268
26
23
13
36
1.91
2193--2250
25
2.3
25
87
0
80
22
25
13
37
1.91
22958--22982
13
1.9
13
100
0
50
0
0
12
88
0.53
30634--31083
68
6.7
68
74
9
313
22
19
16
41
1.90
30642--31019
135
2.8
130
79
8
350
22
19
17
41
1.91
30642--31074
135
3.2
130
76
13
348
23
19
16
40
1.91
30644--31427
66
11.8
66
76
8
460
22
18
16
41
1.90
42039--42079
6
6.8
6
94
0
73
82
0
14
2
0.76
43037--43073
18
2.0
19
94
5
67
64
10
13
10
1.49
44980--45076
48
2.0
48
100
0
194
26
14
25
32
1.94
45337--45376
19
2.1
19
95
0
71
30
17
15
37
1.90
47951--48247
41
7.0
42
73
12
241
24
9
25
40
1.85
47955--48244
85
3.4
84
85
3
393
23
10
25
40
1.86
55302--55352
21
2.4
21
96
0
93
17
43
17
21
1.88
55301--55386
21
4.1
21
74
16
70
23
37
20
18
1.94
71732--71798
31
2.2
31
97
0
125
56
14
10
17
1.66

Tables:   1

The End!