Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021172.1 Corchorus olitorius cultivar O-4 contig21205, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3182
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.32


Found at i:1796 original size:17 final size:17

Alignment explanation


    Indices: 1774--1806  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       1764 TCTTGAGTGC

                             
       1774 GAGTATACAGTTAGAGT
          1 GAGTATACAGTTAGAGT

                  *         
       1791 GAGTATCCAGTTAGAG
          1 GAGTATACAGTTAGAG

       1807 CAAAGAATAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.33, C:0.09, G:0.30, T:0.27


Consensus pattern (17 bp):   
GAGTATACAGTTAGAGT

Found at i:3120 original size:18 final size:18

Alignment explanation


    Indices: 3092--3136  Score: 56
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       3082 TCAGTTTTTT

                                
       3092 AATTAAAATAGTAAGT-AAA
          1 AATT-AAATAGTAA-TAAAA

                       *      
       3111 AATTAAATAGTTATAAAA
          1 AATTAAATAGTAATAAAA

                    
       3129 AATTAAAT
          1 AATTAAAT

       3137 TCAATTATAT


Statistics
Matches: 24,  Mismatches: 1, Indels: 3
        0.86            0.04        0.11

Matches are distributed among these distances:
  17    1  0.04
  18   19  0.79
  19    4  0.17

ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31


Consensus pattern (18 bp):   
AATTAAATAGTAATAAAA
Done.