Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021176.1 Corchorus olitorius cultivar O-4 contig21209, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4281
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.34


Found at i:3971 original size:28 final size:28

Alignment explanation


    Indices: 3934--4033  Score: 155
    Period size: 28  Copynumber: 3.6  Consensus size: 28

       3924 TAGGTCATTT

                 *                      
       3934 AGGGGGATTTTGGTCATTTTGCATATCC
          1 AGGGGCATTTTGGTCATTTTGCATATCC

                                        
       3962 AGGGGCATTTTGGTCATTTTGCATATCC
          1 AGGGGCATTTTGGTCATTTTGCATATCC

             *                  *  *   *
       3990 AAGGGCATTTTGGTCATTTTACACATCT
          1 AGGGGCATTTTGGTCATTTTGCATATCC

                            
       4018 AGGGGCATTTTGGTCA
          1 AGGGGCATTTTGGTCA

       4034 CTTCAAGTGC


Statistics
Matches: 66,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  28   66  1.00

ACGTcount: A:0.20, C:0.16, G:0.26, T:0.38


Consensus pattern (28 bp):   
AGGGGCATTTTGGTCATTTTGCATATCC
Done.