genome.fa.s21183.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021183.1 Corchorus olitorius cultivar O-4 contig21216, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  175514

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2478--2511	6	5.3	6	86	13	50	17	2	0	79	0.86
3976--4017	21	2.0	21	85	0	57	33	0	19	47	1.49
6087--6507	209	2.0	209	94	0	745	35	10	2	50	1.51
18090--18168	31	2.6	31	80	9	90	35	21	12	30	1.91
21175--21230	2	29.5	2	79	16	57	42	0	3	53	1.18
21155--21230	19	4.1	19	77	13	68	42	0	3	53	1.19
21495--21520	2	13.0	2	100	0	52	50	0	0	50	1.00
31912--31958	21	2.3	20	82	7	58	34	23	6	36	1.80
33940--35199	627	2.0	627	96	0	2346	29	23	13	33	1.93
36216--36251	2	18.0	2	100	0	72	50	0	0	50	1.00
38508--38601	45	2.2	43	86	7	138	37	20	6	36	1.78
41237--41280	18	2.4	19	81	11	56	29	0	2	68	1.02
42034--42075	17	2.4	18	80	4	50	66	2	0	30	1.04
43719--43761	3	14.3	3	80	9	52	32	4	0	62	1.15
45005--45064	19	3.1	19	76	9	66	40	11	15	33	1.83
45000--45063	21	3.1	21	75	8	69	39	12	15	32	1.85
45104--45197	22	4.3	22	75	5	75	35	8	18	38	1.81
45280--45362	22	3.7	22	80	9	87	42	12	15	30	1.83
45205--45316	44	2.5	44	78	2	109	39	8	16	35	1.79
45462--45712	22	11.5	21	73	7	162	35	11	19	33	1.88
45454--45712	44	5.9	44	73	6	179	35	11	19	34	1.87
48929--49455	166	3.2	166	77	6	503	37	18	16	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50584--50613	15	2.1	14	93	6	51	33	0	0	66	0.92
51782--51811	15	2.1	14	93	6	51	66	0	0	33	0.92
56278--56313	19	1.9	18	88	5	54	41	8	22	27	1.82
56266--56325	30	2.0	30	83	6	77	41	8	18	31	1.80
61362--61391	15	2.0	15	93	0	51	23	10	20	46	1.80
61470--61525	20	2.8	20	97	2	105	39	23	0	37	1.55
64480--65518	517	2.0	517	96	0	1934	43	16	14	25	1.85
65931--65968	18	2.1	19	90	5	60	63	10	15	10	1.52
67650--67765	59	2.0	59	92	0	196	20	15	17	46	1.84
73024--73064	21	2.0	21	85	9	57	34	9	26	29	1.88
79711--79745	16	2.2	16	94	0	61	22	14	11	51	1.74
80817--81111	38	7.7	38	76	6	218	39	16	16	27	1.90
80829--81073	115	2.1	115	93	0	427	40	16	15	27	1.89
81175--81263	34	2.5	36	78	14	96	30	23	22	23	1.99
82348--82388	12	3.6	11	87	12	57	14	0	2	82	0.76
82353--82386	18	1.9	17	94	5	59	14	0	0	85	0.60
87222--87258	18	2.0	19	89	5	58	8	13	13	64	1.48
92636--92680	21	2.1	21	84	8	56	6	31	20	42	1.77
96102--96137	19	1.9	18	88	5	54	41	8	22	27	1.82
96744--96794	18	2.8	18	96	3	93	9	17	9	62	1.52
97744--97777	13	2.5	13	95	4	59	8	8	0	82	0.85
101110--101158	22	2.3	22	86	6	75	38	4	12	44	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102311--102349	19	2.0	21	90	10	64	43	7	20	28	1.79
105804--105842	18	2.1	19	90	4	62	43	2	20	33	1.65
110219--110248	15	2.0	15	93	0	51	23	40	6	30	1.80
111644--111699	20	2.8	21	78	13	64	19	8	16	55	1.67
117910--117949	19	2.1	19	95	0	71	40	30	17	12	1.86
118550--118589	15	2.6	16	88	4	55	62	12	10	15	1.54
124876--124923	24	2.0	24	83	0	60	70	16	4	8	1.27
125205--125244	15	2.6	16	88	4	55	62	12	10	15	1.54
129306--129340	15	2.3	15	95	0	61	62	22	0	14	1.31
129614--129670	30	1.9	29	89	10	89	59	5	14	21	1.54
130844--130879	14	2.6	15	83	16	51	77	0	0	22	0.76
137749--137817	22	3.1	22	91	4	104	23	31	14	30	1.94
140464--140614	14	10.3	14	68	20	78	39	6	0	53	1.32
140457--140630	44	3.9	43	77	9	172	40	6	0	52	1.33
140458--140630	88	2.0	88	93	2	294	39	6	0	52	1.33
140603--140663	27	2.4	23	76	21	68	47	6	0	45	1.28
140611--140665	27	2.1	26	89	3	83	47	7	0	45	1.30
140607--140795	43	4.4	43	75	18	171	42	10	0	46	1.42
140466--140800	13	23.2	14	65	23	103	40	8	0	49	1.38
140630--140803	87	2.0	87	93	5	300	40	10	0	48	1.43
140523--140743	113	1.9	115	82	5	279	40	9	0	49	1.41
141250--141289	21	2.0	21	85	5	55	12	10	27	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151028--151059	16	2.1	16	88	11	50	25	28	21	25	1.99
153314--153353	15	2.6	16	88	4	55	62	12	10	15	1.54
157354--157393	15	2.6	16	88	4	55	62	12	10	15	1.54
167744--167978	116	2.0	117	91	0	382	32	21	16	28	1.95
171809--171869	30	2.0	30	84	6	79	27	16	8	47	1.75

Tables:   1

The End!